Papers

1. Manning JR, Hulbert JC, Williams J, Piloto L, Sahakyan L, Norman KA (2014d) A neural signature of intentional forgetting via contextual flushing. Under revision at The Journal of Neuroscience.
2. Manning JR, Stachenfeld K, Ranganath R, Turk-Browne N, Norman KA, Blei DM (2014e) A probabilistic approach to full-brain functional connectivity. In preparation.
3. Ramayya A, Manning JR, Jacobs J, Fried I, Kahana MJ (2014) A nonlinear relation between human neuronal spiking and spectral changes in the local field potential. Under revision at Neuron. [PDF]
4. Li N, Manning JR, Kahana MJ (2014) Long-range interactions between neurons encode navigationally relevant information in the human brain. In preparation.
5. Manning JR, Ranganath R, Keung W, Turk-Browne NB, Cohen JD, Norman KA, Blei DM (2014) Hierarchical Topographic Factor Analysis. IEEE Xplore, 4th International Workshop on Pattern Recognition in Neuroimaging: 113 - 116. [PDF][CODE]
6. Benson NC, Manning JR, Brainard DH (2014) Unsupervised learning of cone spectral classes from natural images. PLoS Computational Biology, 10(6): e1003652. [PDF][CODE][The Scientist]
7. Manning JR, Ranganath R, Norman KA, Blei DA (2014) Topographic Factor Analysis: a Bayesian model for inferring brain networks from neural data. PLoS One, 9(5): e94914. [PDF][MOV1][MOV2][MOV3][MOV4][MOV5]
8. Manning JR, Lew TF, Li N, Kahana MJ, Sekuler RW (2013) MAGELLAN: a cognitive map-based model of human wayfinding. Journal of Experimental Psychology: General, 143(3): 1314 - 1330. [PDF]
9. Manning JR, Gershman SJ, Norman KA, Blei DM (2012) Factor topographic latent source analysis: factor analysis for brain images. Proceedings of the NIPS Workshop on Machine Learning and Interpretation in Neuroimaging, 2: Online. [PDF]
10. Manning JR, Kahana MJ (2012) Interpreting semantic clustering effects in free recall. Memory, 20(5): 511 - 517. [PDF]
11. Manning JR, Sperling MR, Sharan A, Rosenberg EA, Kahana MJ (2012) Spontaneously reactivated patterns in frontal and temporal lobe predict semantic clustering during memory search. The Journal of Neuroscience, 32(26): 8800 - 8816. [PDF][UPenn press release][New Scientist][Los Angeles Times]
12. Manning JR, Polyn SM, Baltuch G, Litt B, Kahana MJ (2011) Oscillatory patterns in temporal lobe reveal context reinstatement during memory search. Proceedings of the National Academy of Sciences of the United States of America, 108(31), 12893 - 12897. [PDF][UPenn press release][New York Times]
13. Jacobs J, Manning JR, Kahana MJ (2010) Response to Miller: "Broadband" vs. "high gamma" electrocorticographic signals. The Journal of Neuroscience, 30, Online. [PDF]
14. Manning JR, Jacobs J, Fried I, Kahana MJ (2009) Broadband shifts in local field potential power spectra are correlated with single-neuron spiking in humans. The Journal of Neuroscience, 29(43), 13613 - 13620. [PDF]
15. Manning JR, Brainard DB (2009) Optimal design of photoreceptor mosaics: why we do not see color at night. Visual Neuroscience, 26, 5-19. [PDF]

Dissertations

1. Manning JR (2011) Acquisition, storage, and retrieval in digital and biological brains. Doctoral dissertation: University of Pennsylvania, Philadelphia, PA. [PDF]
2. Manning JR (2006) Modeling human spatial navigation using a degraded ideal navigator. Senior thesis: Brandeis University, Waltham, MA. [PDF]

Book Chapters

1. Manning JR, Norman KA, Kahana MJ (2015) The role of context in episodic memory. To appear in Gazzaniga M, Ed. The Cognitive Neurosciences. Cambridge, MA: MIT Press. [PDF]

Abstracts & Posters

1. Manning JR, Stachenfeld K, Ranganath R, Norman KA, Blei DM (2014) Efficient discovery of functional brain networks in large multi-subject fMRI datasets. Society for Neuroscience. Washington, DC. [PDF]
2. Manning JR, Hulbert JC, Williams JA, Piloto LR, Sahakyan L, Norman KA (2014) Neural evidence for a context-change account of list-method directed forgetting. Society for Neuroscience. Washington, DC. [PDF]
3. Manning JR, Ranganath R, Blei DM, Norman KA (2014) Hierarchical Topographic Factor Analysis: a MATLAB toolbox for efficiently discovering brain networks in fMRI data. Context and Episodic Memory Symposium. Philadelphia, PA. [PDF]
4. Manning JR, Blei DM, Norman KA (2013) Integrating neural and behavioral data into episodic memory models. Society for Neuroscience. San Diego, CA. [PDF]
5. Manning JR, Blei DM, Norman KA (2013) A probabilistic temporal context model for tracking mental context using neural and behavioral data. Context and Episodic Memory Symposium. Philadelphia, PA. (Also presented at Collaborative Research in Computational Neuroscience. Boston, MA) [PDF]
6. Manning JR, Gershman SJ, Blei DM, Norman KA (2012) Factor topographic latent source analysis: factor analysis for brain images. Neural Information Processing Systems Machine Learning in NeuroImaging Workshop. Lake Tahoe, NV. [PDF]
7. Manning JR, Blei DM, Norman KA (2012) Decoding topic vectors during memory encoding and retrieval. Society for Neuroscience. New Orleans, LA. [PDF]
8. Ramayya AG, Manning JR, Jacobs J, Fried I, Kahana MJ (2012) Distinct neuronal contributions to high frequency power changes in human local field potential recordings. Society for Neuroscience. New Orleans, LA. [PDF]
9. Li N, Manning JR, Kahana MJ (2012) Decoding task and location information from multi-unit and local field potential activity. Society for Neuroscience. New Orleans, LA. [PDF]
10. Manning JR, Blei DM, Norman KA (2012) Text, neuroimaging, and memory: unified models of corpora and cognition. Collaborative Research in Computational Neuroscience. St. Louis, MO. [PDF]
11. Manning JR, Blei DM, Norman KA (2012) Tracking item representations during free recall. Context and Episodic Memory Symposium. Bloomington, IN. [PDF]
12. Manning JR, Kahana MJ (2011) How does the brain represent and retrieve word meanings? Collaborative Research in Computational Neuroscience. Princeton, NJ. [PDF]
13. Gershman SJ, Manning JR, Blei DM, Norman KA (2011) New tools for decoding mental representations from neuroimaging data. Collaborative Research in Computational Neuroscience. Princeton, NJ. [PDF]
14. Manning JR, Kahana MJ (2011) How does the brain represent and retrieve word meanings? Society for Neuroscience. Washington, DC. [PDF]
15. Manning JR, Kahana MJ (2011) Temporal and frontal networks reveal how conceptual memories are organized. Context and Episodic Memory Symposium. Philadelphia, PA. [PDF]
16. Manning JR, Hurst B, Brainard DH (2011) Learning receptor types from receptor responses. COmputational and SYstems NEuroscience. Salt Lake City, UT. [PDF]
17. Manning JR, Polyn SM, Kahana MJ (2010) A neural signature of mental time travel. Society for Neuroscience. San Diego, CA. [PDF]
18. Ramayya AG, Manning JR, Jacobs J, Kahana MJ (2010) The firing rate-LFP relation changes as a function of firing rate in humans. Society for Neuroscience. San Diego, CA. [PDF]
19. Manning JR, Polyn SM, Kahana MJ (2010) Observing mental time travel in action: neurophysiological support for context-based models of episodic memory. Context and Episodic Memory Symposium. Philadelphia, PA. [PDF]
20. Manning JR, Polyn SM, Kahana MJ (2009) Neural correlates of context-based models of free recall. Society for Neuroscience. Chicago, IL. [PDF]
21. Manning JR, Polyn SM, Kahana MJ (2009) The neural representation of context and its role in free recall. Society for Mathematical Psychology. Amsterdam, The Netherlands. [PDF]
22. Manning JR, Jacobs J, Fried I, Kahana MJ (2008) Broadband shifts in EEG power spectra are correlated with single-neuron activity in humans. Society for Neuroscience. Washington, DC. [PDF]
23. Manning JR, Jacobs J, Fried I, Kahana MJ (2008) Broadband shifts in EEG power spectra are correlated with single-neuron activity in humans. Society for Mathematical Psychology. Washington, DC. [PDF]
24. Manning JR, Kahana MJ, Sekuler R (2007) An ideal navigator model of human wayfinding: learning one's way around a new town. Cognitive Neuroscience Society. New York, NY. [PDF]
25. Manning JR, Brainard DH (2007) Why don't we see color at night? COmputational and SYstems NEuroscience. Salt Lake City, UT. [PDF]